pydent change log

1.0.3

2020-09-09T22:17:51.082004 Add handling of Krill libraries

1.0.2

2020-07-13T11:26:44.038874 Add tests to operation type.

1.0.1

2020-07-13T11:18:08.599254 Add tests to operation type.

1.0.0

2020-06-18T19:42:47.055781 Make release 1.0.0 from 0.1.0alpha

0.1.5a23

2020-05-19T10:09:04.242576 updates to AQL

  • query key changed to __query__ key

0.1.5a21

2020-05-13T08:32:18.023349 Correction

  • removed print statement from pydent.save_inventory

0.1.5a20

2020-04-26T10:52:22.897648 new features (AQL)

  • AQL: add __options__.pageSize to AQL schema

0.1.5a19

2020-04-25T19:58:33.514625 new features

  • Serialization: model.dump(include_uri=True) will return a unique URI for the model upon dump

  • Serialization: model.dump(include_model_type=True) will return the model class name upon dump

  • AQL: __as__ key was removed from AQL query scheme. To dump JSON, add the __json__ key to the top level.

  • AQL: __json__ will, by default, dump uri and model attributes. These option can be changed by setting __json__ = {"include_uri": false, "include_model_type": false}

0.1.5a18

2020-03-15T14:19:15.948876 MIT License

0.1.5a17

2020-02-20T11:09:02.777062 bug fix

  • sample.save checks for required properties

0.1.5a16

2020-02-16T14:36:27.391598

  • Added complex query method session.query and corresponding query schema.

  • Fixes to session.browser.where

0.1.5a15

2020-02-14T13:30:48.952836 bug fixes

  • several bug fixes related to setting FieldValue properties

  • Planner.add_from_template will add operations from a template to this Planner

  • Planner.copy has been fixed

0.1.5a14

2020-02-14T13:15:38.789723 Ω

0.1.5

2019-12-13T00:15:30.557477 0.1.5a14

  • bug fixes

  • merge added to sample, which merge samples by name

  • save_inventory optionally merged samples

0.1.5a13

2019-12-12T23:16:13.054507 features

  • save_inventory method to save Samples, Collections, Plans, and Items

0.1.5a12

2019-12-12T21:04:58.993258 bug fixes

  • Planner.optimize bug fixes

0.1.5a11

2019-12-12T20:57:28.457117 bug fixes

  • fixed bug in which data associations without an id would attempt to save to server

  • added method to delete data associations from Collection.parts

  • added explicit method to add associations to parts

0.1.5a10

2019-12-12T16:05:57.054929 New major features

  • Collection model completely reworked.

  • Collection now has multiple ‘views’ to view dat, including sample_id, sample, data_value, data_associations, part_associations, and parts.

  • Collection sample_ids and data_associations c can be updated using advanced indexing

  • Collection update now will automatically update DataAssociations along with the Collection itself

  • DataAssociator refactored and fixed

  • Items now automatically upddate their data associations upon save

0.1.5a9

2019-11-19T18:48:57.740353 slimmed dependencies

  • removed arrow

  • removed pandas

  • changed browser.samples_to_df to check if pandas is installed

0.1.5a8

2019-11-19T18:33:38.350971 bug fixes

  • fixes loggable class and adds tests

  • fixes issue with attribute access in session

  • fixes issue whe3re Plan.one() return None for Aquarium 2.7

  • Plan no longer includes wires on query

0.1.5a6

2019-08-08T14:52:14.631040

0.1.5a5

2019-08-08T14:43:40.229011 bug fix

  • fixes bug with field values that have no operations when using planner.set_to_available_item

0.1.5a4

2019-08-08T14:37:26.698386 bug fix with setting available items

  • fixed RESTRICT_TO_ONE for item_preference in planner

  • added RESTRICT_TO_ONE_ON_SERVER that looks at all reserved items on the server

0.1.5a3

2019-08-06T14:42:09.748998 bug fixes

  • fixes find(id=0) bug that raised a mysterious error

  • session..all() no longer raises error when cache is being used

0.1.5a2

2019-07-28T13:08:07.331007 minor bug fixes

  • Fixed error that occurred when Planner and PlannerLayout had no operations

  • Added ‘using_verbose’ to session factory. Create a verbose session using session(using_verbose=True)

  • Improved logging library. Logging library accessible via ‘.log’ as in session.log.info(<msg>)

  • Traceback limit for logging can be set using session.log.set_tb_limit(<limit>)

0.1.5a1

2019-07-26T08:46:10.461557 installation of keats

  • keats manager tool installation

  • remove warnings that occurred during plan.save() and plan.update()

0.1.5a

  • fixes a planner.open() bug

0.1.4a

  • fixes a planner.save() bug

0.1.3a

  • added pydent.login method, which returns an AqSession instance with option to input password securely. Useful for live demos.

0.1.2a

  • Major changes

  • Planner class - a convenience class creating and editing plans in Aquarium.

  • Browser - a convenience class for browsing Samples and other models. Includes caching and query bundling to reduce number of queries and increase script speed.

  • new queries (one, last, first)

  • removed requirement of Marshmallow serialization/deserialization dependency, replaced by faster code

  • Removed marshmallow as a serialization/deserialization library. A custom library is now used that avoids unnecessary field validation. As a result, model load and dump is many fold faster.

Minor changes

  • Continuous validation - Cannot set Nested/Relationship attributes to arbitrary values. E.g. sample_type.sample = 5 will raise an Exception, but setting sample_type.sample = mysample will not.

    • sample_type.sample = mysample will also automatically set the sample_id attribute, since this is defined in the HasOne relationship as an attribute_key. But setting sample_type.sample.id = 5 will not change the sample_id key.

  • setting None will no longer trigger a query attempt. In previous versions, a relationship whose value was set to None would intialize a query attempt anytime getattr accessed a model attribute, using round-about exception handling to avoid errors; this made it impossible to set a relationship attribute to None. Now, a query will only be initiated if the key does not exist in the models underlying data. This means that data received from Aquarium will be used as expected (i.e. setting {"sample": None} will not try to initiate a query next time model.sample is called).

    • FieldValue.set_value now handles None values. In previous version, None values passed into set_field_value would be ignored, making it difficult to reset a FieldValue. For example field_value.set_value(sample=None) will now reset the sample value for the FieldValue instead of being ignored.

  • primary_key will return an id. If id==None, then the rid is returned (e.g. rid1023)

  • HasOne relationship will automatically set the corresponding model reference when setting attributes. E.g. sample.sample_type = myst will also automatically set sample.sample_type_id = myst.id since this is defined in the HasOne field. Similar tracking is not implemented for other relationships.

Developer changes

  • poetry https://poetry.eustace.io/ now used as the package manager, replacing pipenv

  • vcrpy` is used to cache and store queries for deterministic testing.

  • Improved documentation.